Обитатели земных глубин. О самых странных существах на планете - Карен Ллойд

Теске, Элизабет Трембат-Райхерт, Стив Тёрнер, Джозеф Валлино, Татьяна Вишнивецкая, Лекета Уильямс и все сотрудники кемпинга Ferguson Camp на озере Элфин и Епископальной церкви Святого Иакова в Ноксвилле, штат Теннесси. Без энтузиазма и поддержки этих людей я никогда бы не довела дело до конца.

Список литературы

Вступление

1 Pedersen K. Exploration of deep intraterrestrial microbial life: Current perspectives. FEMS Microbiol. Lett. 185, 9–16 (2000).

2 Onstott T. C. Deep Life: The Hunt for the Hidden Biology of Earth, Mars, and Beyond. Princeton University Press, 2017.

3 Valentine D. L. Microbiology: Intraterrestrial lifestyles. Nature. 496, 176–77 (2013).

Глава 1. Живет ли кто-то в земной коре?

1 Chivian D. et al. Environmental genomics reveals a single-species ecosystem deep within Earth. Science. 322, 275–78 (2008).

2 Ruff S. E. et al. Hydrogen and dark oxygen drive microbial productivity in diverse groundwater ecosystems. Nat. Commun. 14, 3194 (2023); Kraft B. et al. Oxygen and nitrogen production by an ammonia-oxidizing archaeon. Science. 375, 97–100 (2022).

3 LaRowe D. E. et al. Temperature and volume of global marine sediments. Geology. 45, 275–78 (2017).

4 Karner M. B. et al. Archaeal dominance in the mesopelagic zone of the Pacific Ocean. Nature. 409, 507–10 (2001); Parkes R. J. et al. Recent studies on bacterial populations and processes in subseafloor sediments: A review. Hydrogeol. J. 8, 11–28 (2000).

5 Kallmeyer J. et al. Global distribution of microbial abundance and biomass in subseafloor sediment. Proc. Natl. Acad. Sci. USA. 109, 16213–16 (2012).

6 Magnabosco C. et al. The biomass and biodiversity of the continental subsurface. Nat. Geosci. 11, 707–17 (2018).

7 Lloyd K. G. et al. Spatial structure and activity of sedimentary microbial communities underlying a Beggiatoa spp. mat in a Gulf of Mexico hydrocarbon seep. PLOS One. 5, e8738 (2010).

Глава 2. Вгрызаемся в твердую землю

1 Heuer V. B. et al. Temperature limits to deep subseafloor life in the Nankai Trough subduction zone. Science. 370, 1230–34 (2020).

2 Onstott T. C. Deep Life: The Hunt for the Hidden Biology of Earth, Mars, and Beyond. Princeton University Press, 2017.

3 Summit M., Baross J. A. A novel microbial habitat in the mid-ocean ridge subseafloor. Proc. Natl. Acad. Sci. 98, 2158–63 (2001).

Глава 3. Две ДНК-революции

1 Rappé M. S., Giovannoni S. J. The uncultured microbial majority. Annu. Rev. Microbiol. 57, 369–94 (2003).

2 Там же; Teske A., Sørensen K. B. Uncultured archaea in deep marine subsurface sediments: Have we caught them all? ISME J. 2, 3–18 (2008).

3 Sogin M. L. et al. Microbial diversity in the deep sea and the underexplored “rare biosphere”. Proc. Natl. Acad. Sci. USA. 103, 12115–20 (2006); Huber J. A. et al. Microbial population structures in the deep marine biosphere. Science. 318, 97–100 (2007).

4 Lloyd K. G. et al. An anaerobic methane-oxidizing community of ANME-1b archaea in hypersaline Gulf of Mexico sediments. Appl. Environ. Microbiol. 72, 7218–30 (2006).

5 Louca S. et al. A census-based estimate of Earth's bacterial and archaeal diversity. PLOS Biol. 17, e3000106 (2019).

Глава 4. Люди и другие растения

1 Margulis L., Schwartz K. V. Five Kingdoms: An Illustrated Guide to the Phyla of Life on Earth. Freeman & Company, W. H., 1982.

2 Woese C. R. Bacterial evolution. Microbiol. Rev. 51, 221–71 (1987).

3 Mayr E. Perspective: Two empires or three? Comp. Gen. Pharmacol. 95, 9720–23 (1998).

4 Там же.

5 Baker B. J. et al. Diversity, ecology and evolution of Archaea. Nat. Microbiol. 29, 887–900 (2020).

6 Hug L. A. et al. A new view of the tree of life. Nat. Microbiol. 1, 1–6 (2016).

7 Jagus R. et al. Diversity of eukaryotic translational initiation factor eIF4E in protists. Comp. Funct. Genomics. 2012, 1–21 (2012).

8 Jurgens G. et al. Identification of novel Archaea in bacterioplankton of a boreal forest lake by phylogenetic analysis and fluorescent in situ hybridization. FEMS Microbiol. Ecol. 34, 45–56 (2000).

9 Inagaki F. et al. Microbial communities associated with geological horizons in coastal subseafloor sediments from the sea of Okhotsk. Appl. Environ. Microbiol. 69, 7224–35 (2003).

10 Takai K. E. N. et al. Archaeal diversity in waters from deep South African gold mines. Appl. Environ. Microbiol. 67, 5750–60 (2001).

11 Lloyd K. G. et al. Predominant archaea in marine sediments degrade detrital proteins. Nature. 496, 215–18 (2013).

12 Edwards K. J. An archaeal iron-oxidizing extreme acidophile important in acid mine drainage. Science. 287, 1796–99 (2000).

13 Tyson G. W. et al. Community structure and metabolism through reconstruction of microbial genomes from the environment. Nature. 428, 37–43 (2004).

14 Wrighton K. C. et al. Fermentation, hydrogen, and sulfur metabolism in multiple uncultivated bacterial phyla. Science. 337, 1661–66 (2012).

15 Meng J. et al. Genetic and functional properties of uncultivated MCG archaea assessed by metagenome and gene expression analyses. ISME J. 8, 650–59 (2014).

Глава 5. Как выжить в вулкане?

1 Madshus I. H. Regulation of intracellular pH in eukaryotic cells. Biochem. J. 250, 1–8 (1988).

2 Golyshina O. V. et al. The “pH optimum anomaly” of intracellular enzymes of Ferroplasma acidiphilum. Environ. Microbiol. 8, 416–25 (2006).

3 Baker-Austin C., Dopson M. Life in acid: pH homeostasis in acidophiles. Trends Microbiol. 15, 165–71 (2007).

4 Hynek B. M. et al. Lack of microbial diversity in an extreme Mars analog setting: Poás volcano, Costa Rica. Astrobiology. 18, 923–33 (2018).

5 Russell M. J. et al. Serpentinization as a source of energy at the origin of life. Geobiology. 8, 355–71 (2010).

6 Krulwich T. A. et al. Adaptive Mechanisms of Extreme Alkaliphiles // Extremophiles Handbook (ed. Horikoshi K.). Springer Japan, 2011.

7 Suzuki S. et al. Unusual metabolic diversity of hyperalkaliphilic microbial communities associated with subterranean serpentinization at the Cedars. ISME J. 11, 2584–98 (2017).

Глава 6. Дышим минералами

1 Larowe D. E., Cappellen P. V. Degradation of natural organic matter: A thermodynamic analysis. Geochim. Cosmochim. Acta. 75, 2030–42 (2011).

2 Nealson K. H. Sediment bacteria: Who's there, what are